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From: Jeffrey C. Hansen <hansen@bioc02.uthscsa.edu>
To : rasmb@bbri.eri.harvard.edu
Date: Fri, 19 May 1995 11:03:53 -0500 (CDT)
Re: sedimentation database
Dear RASMBers,
It strikes me that the recent dialogue concerning a raw data depository
is lacking one essential ingredient: vision. It has become clear that
some of us favor the depository idea while some of us don't. Somewhat
bothersome to me has been the tone of those that don't; there seems to be
an implication in some of these messages that a depository it a bad, if
not worthless, idea. However, I would like to suggest that the major
potential benefits of a raw data depot will manifest primarily in the
FUTURE - hence the need for vision by those of us currently residing in
the present. For example, if analytical ultracentrifugation make the
type of comeback over the next 10 years that seems increasingly likely,
it will spawn a new generation of Yphantis/Stafford/Demeler/Philo et al.
clones who will look at what we're doing now with analysis methodologies
and conclude that they can do things better (and of course, they are
likely to be correct!). A well stocked depot will certainly facilitate
their efforts. Also, while I think that synthestic data with added noise
is a nice place to start, to imply that this is all anyone needs is
naive. I have routinely observed boundaries that are so complex that we
would have never even considered the possibility that such complexity
could exist if we hadn't stumbled across it empirically. These types of
data push ALL current data analysis protocols beyond their limits, hence
they need to be available to anyone who wants them, at any point in the
future. For all I know, I'll be pumping gas 10 years from now, so the
idea of direct contact as a way to get my data in the future seems risky.
A second specific benefit of a raw data repository involves education. I
hope that no one disputes the fact that we need to get the principles and
practice of analytical ultracentrifugation back into the standard
biochemical curriculum. It can't be that hard to see that Prof. Doe at
Podunk U. will be better able to develop a truly state-of-the-art
lecture/lab exercise in analytical ultracentrifugation if he/she has
instant and easy access to hundreds of gigabytes of broad spectrum AU
data, compared to what such a person is likely NOT to do if they have to
hunt it down from individual sources or try and synthesize it
themselves. Remember, I am not talking about the present, but a proposed
near future in which the internet has revolutionized information transfer
and accessibility. There are many other specific examples, but I will
stop here.
All of this having been said, Olwyn's comments are certainly true;
because of the sheer amount of data involved, a raw data depository
exceeds the scope of RASMB. Instead, I suspect that it will eventually
become associated with one of the current "Centers", which will somehow
get grant monies to fund the whole thing. At any rate, if nothing else,
remember the importance of vision when contemplating the future of
analytical ultracentrifugation.
Jeff Hansen
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